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qPCR genotyping assays for QIAGEN®-SARS-CoV2 variant PCR detection kit


QIAGEN® has developed a quick and reliable PCR-based approach to identify the currently known subtypes of SARS-CoV2 in a simple PCR assay.
See further information here and in the QIAGEN® Assay Profile.

To track the current SARS-CoV-2 variants of concern, offers QIAGEN®-developed LNA-based qPCR genotyping assays for use with the QIAprep&amp Viral RNA UM Kit™.

Table of variants of concern/interest

To achieve a higher degree of confidence in SARS-CoV-2 variant identification we recommend to use more than one assay (e.g., Omicron/K417N+Del HV 69/70 and Delta/T478K+L452R).

The following qPCR genotyping assays are available for ordering: Product Channel        Pack size           Price
      SQ10001:          SARS-CoV-2 LNA qPCR Assay N501Y Fam 100rxn 150,00 Euro
      SQ10002: SARS-CoV-2 LNA qPCR Assay E484K Fam 100rxn 150,00 Euro
      SQ10003: SARS-CoV-2 LNA qPCR Assay E484Q Fam 100rxn 150,00 Euro
      SQ10004: SARS-CoV-2 LNA qPCR Assay P681R Fam 100rxn 150,00 Euro
      SQ10005: SARS-CoV-2 LNA qPCR Assay L452R Fam 100rxn 150,00 Euro
      SQ10006: SARS-CoV-2 LNA qPCR Assay T478K Fam 100rxn 150,00 Euro
      SQ10007: SARS-CoV-2 LNA qPCR Assay K417N Fam 100rxn 150,00 Euro
      SQ10008: SARS-CoV-2 LNA qPCR Assay K417T Fam 100rxn 150,00 Euro
      SQ10009: SARS-CoV-2 LNA qPCR Assay T20N Fam 100rxn 150,00 Euro
      SQ10010: SARS-CoV-2 LNA qPCR Assay Del HV 69/70 Fam 100rxn 150,00 Euro
      SQ10011: SARS-CoV-2 LNA qPCR Assay P681H Fam 100rxn 150,00 Euro

Each article contains the respective lyophilised genotyping assay in a single vial to be dissolved according to the accompanying data-sheet and will be sufficient for 100 rxn when used with the QIAprep&amp Viral RNA UM Kit™.

Genotyping assays are compatible in duplex with other SARS-CoV-2 assays (N1, N2, Egene and RdRp)

The following SARS-CoV-2 Control Gene qPCR Assays are available for ordering: Product Channel                          Pack size                   Price 
      SQ11001: SARS-CoV-2 N1 Assay                                          Cyanine 5 100rxn 23,00 Euro
      SQ11002:          SARS-CoV-2 N2 Assay Cyanine 5 100rxn 23,00 Euro
      SQ11003: SARS-CoV-2 RdRp Assay Cyanine 5 100rxn 23,00 Euro
      SQ11004: SARS-CoV-2 Egene Assay Cyanine 5 100rxn 23,00 Euro

Ordering process:
To order please send an email with your full delivery address and billing address (if applicable) to Prices given above do not include shipping. Taxes and duties may apply.

To order the QIAprep&amp Viral RNA UM Kit™, visit QIAGEN® at

Download a Quick-Start Protocol for the SARS-CoV-2 LNA qPCR Assays at

QIAGEN® is a registered trademark of QIAGEN Group. 
QIAprep&amp™ is a trademark of QIAGEN Group.
The QIAprep&amp Viral RNA UM Kit™ by QIAGEN® is for molecular biology applications use only in epidemiology research and not for clinical or diagnostic use.